| fasta_merge.pl |
fasta_merge.pl - Merge all fasta files in a directory
This documentation refers to program version $Rev: 613 $
fasta_merge.pl -i in_dir/ -o out_file.fasta
-i,--indir # Path to the directory containing the fasta files
-o,--outfile # Path to the fasta format outfile
# Writes output to standard output otherwise
Given a directory, merge all of the fasta files in the directory into a single fasta file.
Path to the input directory containing the fasta files.
Path to the fasta file that will be produced. If an output file is not specified at the command line, the output will be writtent to STDOUT.
Run the program in verbose mode, this will write the maximum amount of output to STDERR.
Short overview of how to use program from command line.
Show program usage with summary of options.
Show program version.
Show the full program manual. This uses the perldoc command to print the POD documentation for the program.
Run the program with minimal output.
The error message that can be generated will be listed here.
This program does not depend on external software or perl modules outside of those included in a typcial installation of perl.
If you find a bug with this software, file a bug report on the DAWG-PAWS Sourceforge website: http://sourceforge.net/tracker/?group_id=204962
If you find a limitation that makes it difficult to use this program, please file a bug report on the DAWG-PAWS Sourceforge website: http://sourceforge.net/tracker/?group_id=204962
A manuscript is being submitted describing the DAWGPAWS program. Until this manuscript is published, please refer to the DAWGPAWS SourceForge website when describing your use of this program:
JC Estill and JL Bennetzen. 2009. The DAWGPAWS Pipeline for the Annotation of Genes and Transposable Elements in Plant Genomes. http://dawgpaws.sourceforge.net/
GNU LESSER GENERAL PUBLIC LICENSE
GNU General Public License, Version 3
http://www.gnu.org/licenses/gpl.html
THIS SOFTWARE COMES AS IS, WITHOUT ANY EXPRESS OR IMPLIED WARRANTY. USE AT YOUR OWN RISK.
James C. Estill<lt>JamesEstill at gmail.com>
STARTED: 08/20/2006
UPDATED: 04/06/2009
VERSION: $Rev: 613 $
| fasta_merge.pl |