VERSION

This documentation refers to program version $Rev: 365 $

SYNOPSIS

    batch_seq_summary.pl -i InFile -o OutFile

    -i, --indir    # Directory of fasta files to process
    -o, --outfile  # Path to file to print program output

Display basic summary information for a directory of sequences. Files must end in fasta to be recognized as a fasta file.

-i,--indir: Path of the directory containing the sequences to process.
-o,--outfile: Path of the output file that will contain information for the input sequence files.

--usage: Short overview of how to use program from command line.
--help: Show program usage with summary of options.
--version: Show program version.
--man: Show the full program manual. This uses the perldoc command to print the POD documentation for the program.
-q,--quiet: Run the program with minimal output.
--verbose: Run the program in verbose mode.

Error messages generated by this program and possible solutions are listed below.

ERROR: No fasta files were found in the input directory: The input directory does not contain fasta files in the expected format. This could happen because you gave an incorrect path or because your sequence files do not have the expected *.fasta extension in the file name.
ERROR: Could not create the output file: The output file path may be to a directory that does not exist or you may not have write permission to the directory that you are trying to write to.