| clust_write_shell.pl |
clust_write_shell.pl - Write shell scripts for the r cluster
This documentation refers to fasta_dirsplit version $Rev: 617 $
clust_write_shell.pl -p program -o outdir -b job -n 16
-p # program to write the shell script for
-o # output dirctory to
-b # base name for the shell scripts to write
-n # number of shell scripts to write
# this will also be used to reference dirs
Given information from the command line, write the shell scripts required to run jobs on cluster environments using the LSF queuing system.
Program to write shell scripts for
Path of the directory to place the program output.
Number of dirs to split the parent dir into.
Name to use a base name for creating the subdirectory
Path to a file that will be used to log program status. If the file already exists, additional information will be concatenated to the existing file.
Short overview of how to use program from command line.
Show program usage with summary of options.
Show program version.
Show the full program manual. This uses the perldoc command to print the POD documentation for the program.
Run the program with minimal output.
Run the program without doing the system commands.
Run the program in verbose mode.
Error messages generated by this program and possible solutions are listed below.
The output directory could not be created at the path you specified. This could be do to the fact that the directory that you are trying to place your base directory in does not exist, or because you do not have write permission to the directory you want to place your file in.
This program does not currently rely on an external configuration file or variables set in the user's environment.
This program does not require external software, but the following Perl modules are required.
This module is required to copy the BLAST results.
This module is required to accept options at the command line.
If you find a bug with this software, file a bug report on the DAWG-PAWS Sourceforge website: http://sourceforge.net/tracker/?group_id=204962
The clust_write_shell.pl program is part of the DAWG-PAWS package of genome annotation programs. See the DAWG-PAWS web page ( http://dawgpaws.sourceforge.net/ ) or the Sourceforge project page ( http://sourceforge.net/projects/dawgpaws ) for additional information about this package.
A manuscript is being submitted describing the DAWGPAWS program. Until this manuscript is published, please refer to the DAWGPAWS SourceForge website when describing your use of this program:
JC Estill and JL Bennetzen. 2009. The DAWGPAWS Pipeline for the Annotation of Genes and Transposable Elements in Plant Genomes. http://dawgpaws.sourceforge.net/
GNU GENERAL PUBLIC LICENSE, VERSION 3
http://www.gnu.org/licenses/gpl.html
THIS SOFTWARE COMES AS IS, WITHOUT ANY EXPRESS OR IMPLIED WARRANTY. USE AT YOUR OWN RISK.
James C. Estill <JamesEstill at gmail.com>
STARTED: 07/26/2007
UPDATED: 04/06/2009
VERSION: $Rev: 617 $
| clust_write_shell.pl |