Gene Annotation
DAWGPAWS includes scripts to work with computational
evidences for genes from the following standalone programs and
web services. You can get information for the following
programs by clicking on the annotation program name, and you
can get the documentation for the DAWGPAWS script by clicking
on the script name. For full information on installing and
using these programs, see the DAWGPAWS
manual.
The individual annotation programs are not included in the
DAWGPAWS program and must be installed separately.
| Program |
DAWGPAWS Script |
| Augustus |
|
| BLAST
(NCBI blastall) |
batch_blast.pl batch_cnv_blast2gff.pl cnv_blast2gff.pl |
| BLAT |
cnv_blat2gff.pl |
| EuGene | cnv_eugene2gff.pl |
| Exonerate |
cnv_exonerate2gff.pl |
| Fgenesh | batch_fgenesh.pl cnv_fgenesh2gff.pl |
| GeneMarkHMM | batch_genemark.pl |
| Genscan |
batch_genscan.pl |
| GeneID |
batch_geneid.pl |
| PASA |
|
| SNAP |
batch_snap.pl cnv_snap2gff.pl |
| Author: James
Estill Last Updated: September 28, 2011 |
|
|